How to Cite Caleydo

If you want to cite Caleydo from a bioinformatics, biology or medicine context, pleas use:

• Marc Streit, Alexander Lex, Michael Kalkusch, Kurt Zatloukal, Dieter Schmalstieg:
  Caleydo: Connecting Pathways with Gene Expression
  Bioinformatics, Oxford Journals, 2009.
  
  

For citing Caleydo as an Information Visualization Tool, please use:

• Alexander Lex, Marc Streit, Ernst Kruijff, Dieter Schmalstieg:
  Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context
  Proceedings of 2010 IEEE Pacific Visualization Symposium, Taipeh, Taiwan, 2010.

Reviewed Publications

2011

	Alexander Lex, Hans-Jörg Schulz, Marc Streit, Christian Partl, Dieter Schmalstieg: VisBricks: Multiform Visualization of Large, Inhomogeneous Data To appear in: IEEE Transactions on Visualization and Computer Graphics (InfoVis '11), 17(12), 2011.
	Markus Steinberger, Manuela Waldner, Marc Streit, Alexander Lex, Dieter Schmalstieg: Context-Preserving Visual Links To appear in: IEEE Transactions on Visualization and Computer Graphics (InfoVis '11), 17(12), 2011.
	Marc Streit, Hans-Jörg Schulz, Alexander Lex, Dieter Schmalstieg, Heidrun Schumann: Model-Driven Design for the Visual Analysis of Heterogeneous Data To appear in: IEEE Transactions on Visualization and Computer Graphics, 2011.
	Thomas Geymayer, Alexander Lex, Marc Streit, Dieter Schmalstieg: Visualizing the Effects of Logically Combined Filters Proceedings of the Conference on Information Visualisation (IV ’2011), pp. 47-52, London, UK, 2011.

2010

	Alexander Lex, Marc Streit, Christian Partl, Karl Kashofer, Dieter Schmalstieg: Comparative Analysis of Multidimensional, Quantitative Data IEEE Transactions on Visualization and Computer Graphics (InfoVis '10), 16(6), pp. 1027-1035, 2010.
	Manuela Waldner, Werner Puff, Alexander Lex, Marc Streit, Dieter Schmalstieg: Visual Links across Applications - Best student paper award Proceedings of the Conference on Graphics Interface (GI '10), Ottawa, Ontario, Canada, 2010.
	Alexander Lex, Marc Streit, Ernst Kruijff, Dieter Schmalstieg: Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context Proceedings of 2010 IEEE Pacific Visualization Symposium (PacificVis '10), pp. 57-64, Taipeh, Taiwan, 2010.

2009

	Marc Streit, Alexander Lex, Michael Kalkusch, Kurt Zatloukal, Dieter Schmalstieg: Caleydo: Connecting Pathways with Gene Expression Bioinformatics, Oxford Journals, 25(20), pp. 2760-2761, 2009.
	Marc Streit, Hans-Joerg Schulz, Dieter Schmalstieg, Heidrun Schumann: Towards Multi-User Multi-Level Interaction Procceedings of Workshop on Collaborative Visualization on Interactive Surfaces (CoVIS '09), in conjunction with VisWeek, ISSN 1862-5207, pp. 5-8, Atlantic City, USA, 2009.
	Manuela Waldner, Alexander Lex, Marc Streit, Dieter Schmalstieg: Design Considerations for Collaborative Information Workspaces in Multi-Display Environments Procceedings of Workshop on Collaborative Visualization on Interactive Surfaces (CoVIS '09), in conjunction with VisWeek, ISSN 1862-5207, pp. 36-39, Atlantic City, USA, 2009.
	Heimo Müller, Robert Reihs, Stefan Sauer, Kurt Zatloukal, Marc Streit, Alexander Lex, Bernhard Schlegl, Dieter Schmalstieg: Connecting Genes with Diseases Proceedings of the Conference on Information Visualisation (IV '09), Barcelona, Spain, 2009.
	Marc Streit, Alexander Lex, Heimo Müller, Dieter Schmalstieg: Gaze-Based Focus Adaption in an Information Visualization System In Proceedings of the Conference on Computer Graphics and Visualization and Image Processing (CGVCVIP '09), Algarve, Portugal, 2009.

2008

	Marc Streit, Michael Kalkusch, Karl Kashofer, Dieter Schmalstieg: Navigation and Exploration of Interconnected Pathways Computer Graphics Forum (EuroVis '08), vol. 27, no. 3, pp. 951-958(8), 2008.
	Heimo Müller, Kurt Zatloukal, Marc Streit, Dieter Schmalstieg: Interactive Exploration of Medical Data Sets In Proceedings of the Conference on BioMedical Visualisation, pp. 29-35, 2008.

2007

Marc Streit, Michael Kalkusch, Dieter Schmalstieg: Interactive Visualization of Metabolic Pathways In Proceedings of IEEE Visualization Poster Companion, Sacramento, USA, 2007.

Patents

• Kurt Zatloukal, Heimo Mueller, Dieter Schmalstieg, Michael Kalkusch:
  A device for and a method of interactively processing a set of data,
  a program element and a computer-readable medium
  Patent Nr.: WO2007144148, 21.12.2007

Talks

• Alexander Lex
  Visualizing the Effects of Logically Combined Filters
  Paper presentation at Conference on Information Visualisation, London, UK, July 14, 2011.
• Marc Streit, Hans-Jörg Schulz
  Visual Support for Heterogeneous Analysis Scenarios
  Workshop on Trends in Visual Computing and Visual Analysis, Kühlungsborn, Germany, May 19, 2011.
• Marc Streit
  Visual Analysis of Heterogeneous Data
  PhD Defense, Graz, Austria, April 13, 2011.
• Marc Streit
  Collaborative Information Linking: Bridging Knowledge Gaps between Users by Linking across Applications
  IEEE Pacific Visualization Symposium (PacificVis 2011), Hong Kong, China, March 03, 2011.
• Alexander Lex
  Comparative Analysis of Multidimensional, Quantitative Data
  Paper presentation at IEEE InfoVis 2010, Salt Lake City, Utah, USA, Oktober 28, 2010.
  Download slides
• Alexander Lex, Marc Streit
  Caleydo: Visual Analysis of Biomolecular Data
  Invited talk at the MRC Laboratory of Molecular Biology (LMB), Cambridge, UK, September 21, 2010.
• Marc Streit, Alexander Lex
  Caleydo: Visual Analysis of Biomolecular Data
  Invited talk at the European BioInformatics Institute (EBI), Cambridge, UK, September 20, 2010.
  Download slides
• Marc Streit, Alexander Lex
  Caleydo: Visual Analysis of Biomolecular Data
  Invited talk at VCBM 2010, Leipzig, Germany, July 02, 2010.
• Manuela Waldner:
  Visual Links across Applications
  Graphics Interface 2010, Ottawa, Ontario, Canada, June 01, 2010.
• Alexander Lex, Marc Streit:
  Caleydo - Visualization for Bioinformatics
  Special VRVisForum at VRVis, Vienna, Austria, March 11, 2010.
• Alexander Lex:
  Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context
  PacificVis 2010, Taipei, Taiwan, March 03, 2010.
• Marc Streit:
  Towards Multi-User Multi-Level Interaction
  CoVIS Workshop on Collaborative Visualization on Interactive Surfaces (IEEE VisWeek), Atlantic City, USA,
  October 11, 2009.
• Manuela Waldner:
  Design Considerations for Collaborative Information Workspaces in Multi-Display Environments
  CoVIS Workshop on Collaborative Visualization on Interactive Surfaces (IEEE VisWeek), Atlantic City, USA,
  October 11, 2009.
  
  
• Marc Streit:
  Connecting Genes With Diseases - A Holistic Approach
  Research Training Group dIEM oSiRiS, Rostock, Germany, July 08, 2009.
  
  
• Marc Streit:
  Caleydo Project Overview
  Visual Computing and Computer Graphics department at the University of Rostock, Germany, July 07, 2009.
  
  
• Marc Streit:
  Gaze-Based Focus Adaption in an Information Visualization System
  Computer Graphics and Visualization and Image Processing 2009 Conference (CGVCVIP), Algarve, Portugal, June 20, 2009.
  
  
• Alexander Lex and Marc Streit:
  Caleydo: Visualization of Gene Expression Data in the Context of Biological Processes
  Invited talk at the AUVA Research Center for Traumatology, Vienna, Austria, February 26, 2009.
  
  
• Marc Streit and Alexander Lex:
  Novel InfoVis Techniques Applied to Pathways and Gene Expression Data
  Invited talk at the Institute for Genomics and Bioinformatics, Graz University of Technoloy, Austria, July 10, 2008.
  
  
• Karl Kashofer and Michael Kalkusch:
  Validation of murine xenograft tumor models by gene expression profiling
  2nd Symposium on Geneexpression & Microarray Technology; Graz, Austria, Oct. 4, 2007.
  
  
• Kurt Zatloukal, Dieter Schmalstieg, Michael Kalkusch, Heimo Mueller:
  Systems Biology and Visualisation of complex Medical and Biological Data
  ZMF Workshop on Systems Biology; Graz, Austria; May 21, 2007.

Thesis

• Marc Streit:
  PhD Thesis: Guided Visual Analysis of Heterogeneous Data
  Supervision: Prof. Dieter Schmalstieg and Prof. Heidrun Schumann, March 2011.
  
  
• Alexander Lex:
  Master's Thesis: Exploration of Gene Expression Data in a Visually Linked Environment
  Supervision: Prof. Dieter Schmalstieg, June 2008.
  
  
• Marc Streit:
  Master Thesis: Metabolic Pathways Influencing Gene-Expression Analysis
  Supervision: Prof. Dieter Schmalstieg and Michael Kalkusch, June 2007.
  
  

Posters

• Marc Streit, Alexander Lex, Helmut Doleisch, Dieter Schmalstieg:
  Does software engineering pay off for research? Lessons learned from the Caleydo project.
  Proceedings of the second Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), Leipzig, Germany, July 1 - 2 2010.
  
  
• Marc Streit, Alexander Lex, Dieter Schmalstieg, Heimo Mueller, Stefan Sauer, Wilhelm Steiner, Kurt Zatloukal:
  CALEYDO
  ZMF.Day (Center for Medical Research) 2008, Graz, Austria, November 12, 2008.
  
  
• Manuela Waldner, Christian Pirchheim, Marc Streit, Dieter Schmalstieg:
  Multiple View Visualization On A Multi Display Setup
  International Workshop on Giga-Pixel Displays & Visual Analytics (GIANT), Leeds UK, April 2008.
  
  

Exhibitions

• Marc Streit, Alexander Lex, Dieter Schmalstieg, Heimo Mueller, Kurt Zatloukal:
  FWF Austrian Science Fund Anniversary
  Graz, Austria, December, 2008.
  
  

Others

• Gudrun Schmidt-Gann, Katharina Schmid, Monika Uehlein, Joachim Struck, Andreas Bergmann, Dieter Schmalstieg, Marc Streit, Alexander Lex, Douw G. van der Nest, Martijn van Griensven and Heinz Redl:
  Gene- and Protein Expression Profiling in Liver in a Sepsis-Baboon Model
  In Proceedings of the Conference on Shock, San Antonio, Texas, 2009.
• Manuela Waldner, Christian Pirchheim and Dieter Schmalstieg:
  Multi projector displays using a 3D compositing window manager
  IPT/EDT '08: Proceedings of the 2008 workshop on Immersive projection technologies/Emerging display technologiges, Los Angeles, USA, 2008.
  
• Marc Streit:
  Interactive Visualization Of Complex Graphs
  In Proceedings of CESCG 2007, Central European Seminar on Computer Graphics; Slovakia, April 2007.