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Marc Streit

Marc Streit Function: Scientific and Teaching Assistant (Universitätsassistent)
Email: streit(at)icg.tugraz.at - GPG key
Phone: +43 316 873-5064
Address: Inffeldgasse 16/II, 8010 Graz, Austria
Office: Room IE02170

Marc Streit received a M.Sc. in Computer Science from the Graz University of Technology in 2007. He is currently a research and teaching assistant in the team of Prof. Schmalstieg at the Institute for Computer Graphics and Vision at the Graz University of Technology. He works on his PhD-Thesis within the field of Information Visualization, Visual Analytics and Bioinformatics. His research is focused on the Caleydo project which aims to visualize biomolecular data to help life science experts to understand the function of genes.

Publications | Teaching and Student Supervision | Curriculum Vitae | Projects | Research Interests | Other Stuff

Publications

Reviewed and Invited Publications

  • Alexander Lex, Marc Streit, Christian Partl, Karl Kashofer, Dieter Schmalstieg:
    Comparative Analysis of Multidimensional Quantitative Data
    To appear in: IEEE Transactions on Visualization and Computer Graphics (Proc. InfoVis 2010, Salt Lake City, USA), 2010.
        
  • Marc Streit, Alexander Lex, Helmut Doleisch, Dieter Schmalstieg:
    Does software engineering pay off for research? Lessons learned from the Caleydo project
    Poster at the Eurographics Workshop on Visual Computing for Biomedicine 2010, Leipzig, Germany, July 2010.
  • Manuela Waldner, Werner Puff, Alexander Lex, Marc Streit, Dieter Schmalstieg:
    Visual Links across Applications - Best student paper award
    To appear in: Proceedings of the Graphics Interface (GI) 2010, Ottawa, Ontario, Canada, May 31 - June 2 2010.
             
  • Alexander Lex, Marc Streit, Ernst Kruijff, Dieter Schmalstieg:
    Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context
    Proceedings of the IEEE Pacific Visualization Symposium, pp. 57-64,Taipei, Taiwan, March 2010.
            
  • Marc Streit, Alexander Lex, Michael Kalkusch, Kurt Zatloukal, Dieter Schmalstieg:
    Caleydo: Connecting Pathways and Gene Expression
    Bioinformatics, Oxford Journals, 25(20), pp. 2760-2761, 2009.
        
  • Marc Streit, Hans-Joerg Schulz, Dieter Schmalstieg, Heidrun Schumann:
    Towards Multi-User Multi-Level Interaction
    Proceedings of the CoVIS 2009 Workshop on Collaborative Visualization on Interactive Surfaces (IEEE VisWeek), Atlantic City, USA, October 2009.
        
  • Manuela Waldner, Alexander Lex, Marc Streit, Dieter Schmalstieg:
    Design Considerations for Collaborative Information Workspaces in Multi-Display Environments
    Proceedings of the CoVIS 2009 Workshop on Collaborative Visualization on Interactive Surfaces (IEEE VisWeek), Atlantic City, USA, October 2009.
        
  • Heimo Müller, Robert Reihs, Stefan Sauer, Kurt Zatloukal, Marc Streit, Alexander Lex, Bernhard Schlegl, Dieter Schmalstieg:
    Connecting Genes with Diseases
    Symposium on Information Visualization in Biomedical Informatics, 13th International Conference on Information Visualization (IV'08), Barcelona, Spain, July 2009.
        
  • Marc Streit, Alexander Lex, Heimo Müller, Dieter Schmalstieg:
    Gaze-Based Focus Adaption in an Information Visualization System
    Computer Graphics and Visualization and Image Processing 2009 Conference (CGVCVIP), Algarve, Portugal, June 2009.
        
  • Gudrun Schmidt-Gann, Katharina Schmid, Monika Uehlein, Joachim Struck, Andreas Bergmann,
    Dieter Schmalstieg, Marc Streit, Alexander Lex, Douw G. van der Nest, Martijn van Griensven and Heinz Redl:
    Gene- and Protein Expression Profiling in Liver in a Sepsis-Baboon Model
    32nd Annual Meeting on Shock, San Antonio, Texas, June 6-9, 2009.
  • Marc Streit, Michael Kalkusch, Karl Kashofer, Dieter Schmalstieg:
    Navigation and Exploration of Interconnected Pathways
    Computer Graphics Forum, Volume 27, Number 3, pp. 951-958(8), May 2008.
            
  • Heimo Müller, Kurt Zatloukal, Marc Streit, Dieter Schmalstieg:
    Interactive Exploration of Medical Data Sets
    Symposium on Information Visualization in Biomedical Informatics, 12th International Conference on Information Visualization (IV'09), London, UK, July 2008.
        
  • Marc Streit, Michael Kalkusch, Dieter Schmalstieg:
    Interactive Visualization of Metabolic Pathways
    In Proceedings of IEEE Visualization Poster Companion, Sacramento, USA, November 2007.
        
  • Rupert C. Ecker, Radu Rogojanu, Marc Streit, Katja Oesterreicher, Georg E. Steiner:
    An improved method for discrimination of cell populations in tissue sections using microscopy-based multicolor tissue cytometry
    Journal of Cytometry Part A, Volume 69A, Issue 3, pp. 119-123, March 2006.
        
  • Marc Streit, Rupert C. Ecker, Katja Österreicher, Georg E. Steiner, Horst Bischof, Christine Bangert, Tamara Kopp, Radu Rogojanu:
    3D parallel coordinate systems - A new data visualization method in the context of microscopy-based multicolor tissue cytometry
    Journal of Cytometry Part A, Volume 69A, Issue 7, pp. 601-611, July 2006.
        

Posters

  • Marc Streit, Alexander Lex, Dieter Schmalstieg, Heimo Mueller, Stefan Sauer, Wilhelm Steiner, Kurt Zatloukal:
    CALEYDO
    ZMF.Day (Center for Medical Research) 2008, Graz, Austria, November 12, 2008.
  • Manuela Waldner, Christian Pirchheim, Marc Streit, Dieter Schmalstieg:
    Multiple View Visualization On A Multi Display Setup
    International Workshop on Giga-Pixel Displays & Visual Analytics (GIANT), Leeds UK, April 2008.

Other Publications


Thesis Papers


Talks

01.07.2010 Invited talk at the Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), Leipzig, Germany
Caleydo: Visual Analysis of Biomolecular Data
11.03.2010 Invited talk at the VRVis Research Company, Vienna, Austria
Caleydo and Visual Links
11.10.2009 CoVIS Workshop on Collaborative Visualization on Interactive Surfaces (IEEE VisWeek), Atlantic City, USA
Towards Multi-User Multi-Level Interaction
08.07.2009 Research Training Group dIEM oSiRiS, Rostock, Germany
Connecting Genes With Diseases - A Holistic Approach
07.07.2009 Visual Computing and Computer Graphics department at the University of Rostock, Germany
Caleydo Project Overview
20.06.2009 Computer Graphics and Visualization and Image Processing 2009 Conference (CGVCVIP), Algarve, Portugal
Gaze-Based Focus Adaption in an Information Visualization System
26.02.2009 Invited talk at the AUVA Research Center for Traumatology, Vienna, Austria
Caleydo: Visualization of Gene Expression Data in the Context of Biological Processes
01.10.2008 Welcome Day at the Graz University of Technology, Austria
Experiences of a graduate
10.07.2008 Invited talk at the Institute for Genomics and Bioinformatics, Graz University of Technoloy, Austria
Novel InfoVis Techniques Applied to Pathways and Gene Expression Data
27.05.2008 EuroVis, Eindhoven, Netherlands
Navigation and Exploration of Interconnected Pathways
27.03.2008 Open House at the Graz University of Technology, Austria
Experiences of a graduate
11.10.2007 Welcome Day at the Graz University of Technology, Austria
Experiences of a graduate

Exhibitions

  • Marc Streit, Alexander Lex, Dieter Schmalstieg, Heimo Mueller, Kurt Zatloukal:
    FWF Austrian Science Fund 40-Year Anniversary
    Graz, Austria, December 2008 - January 2009.



























Teaching and Student Supervision


Courses

Since 2009 Computer Graphics - Selected Topics Lecture & lab Winter term
Since 2009 Distributed Systems Lab part Winter term
Since 2009 Accompanying course for project students Lecture Winter & summer term
Since 2009 Computer Graphics 1 Lab part Summer term
Since 2009 Computer Graphics 2 Lab part Summer term
Since 2008 Real-time Graphics Lab part Winter term
Since 2007 Virtual Reality Lab part Summer term

Student Supervision


Open Student Projects

Ongoing Student Projects
Since Feb. 2010 Bachelor's Thesis Eye-Controlled Game
by Michael Kerber
Since April 2010 Bachelor's Thesis Cluster Visualization using Treemaps
by Michael Lafer
Since Feb. 2010 Bachelor's Thesis Eye-Controlled View Management
by Hannes Plank
Since Nov. 2009 Master's Thesis Caleydo: Integrating a Scatter Plot Visualization
by Jürgen Pillhofer
Since March 2009 Bachelor's Thesis Visual Links in a 2D/3D Information Visualization System
by Oliver Pimas
Finished Student Projects
Oct. 2009 - March 2010 Master's Project Comparative Analysis
by Christian Partl
March 2009 - Jan. 2010 Bachelor's Thesis Visualizing Dependencies between Pathway Graphs
by Helmut Pichlhöfer
Feb. 2009 - Jan. 2010 Master's Thesis Visual Analytics for Gene Expression Data
by Bernhard Schlegl
Feb. 2009 - Dec. 2009 Master's Thesis Collaborative Information Visualization in a Multi-Desktop Environment
by Werner Puff
March 2009 - Nov. 2009 Bachelor's Thesis Visualizing a Cluster Hierarchy using a Radial Layout
by Christian Partl
Oct. 2008 - Feb. 2009 Master's Project Multi-Level Information Visualization for Large Data Sets with Heat Maps
by Bernhard Schlegl
July 2008 - June 2009 Bachelor's Thesis Visualization of Patient Data using Glyphs
by Stefan Sauer




Bernhard Schlegl - 2009

Christian Partl - 2009

Curriculum Vitae


Date of birth: February 26th, 1983
Place of birth: Klagenfurt, Austria
Nationality: Austrian

Education

Since August 2009 Associated PhD student in the Research Training Group dIEM oSiRiS, University of Rostock, Germany
July - August 2009 Visiting researcher at the Rostock University of Technology
in the Research Training Group dIEM oSiRiS
under the supervision of Prof. Heidrun Schumann and Prof. Adelinde Uhrmacher
Since July 2007 Doctoral program (PhD) in computer science at the Graz University of Technology
Supervision: Prof. Dieter Schmalstieg and Prof. Heidrun Schumann
June 2007 Master's degree (Dipl.-Ing.) from the Graz University of Technology with highest distinction
2006 - 2007 Master's studies in Computer Science at the Graz University of Technology
July 2006 Bachelor's degree (Bakk. rer. soc. oec) from the Graz University of Technology
2002 - 2006 Bachelor studies in Software Engineering and Management at the Graz University of Technology
2002 Graduation from the HTBLA Moessingerstraße with highest distinction
1997 - 2002 Engineering school (Hoehere Technische Bundeslehranstalt) HTBLA Klagenfurt Moessingerstraße
1993 - 1997 Secondary school (Gymnasium) at the Bundesgymnasium Klagenfurt Moessingerstraße
1989 - 1993 Primary school (Volksschule) at the Paedagogische Akademie Klagenfurt

Professional

Since Oct. 2008 Faculty member (Universitätsassistent) at the Graz University of Technology
Since July 2007 Research assistant at the Institute for Computer Graphics and Vision (Graz University of Technology)
2004 - 2006 Part-time work for TissueGnostics GmbH (BioTech) Research, Programming, Quality Management, Project Management
2002 - 2004 HWS-OTC Service GmbH Webdesign, IT-Consulting
2001, 2002 Internship at Systems@Work Customer Service, Programming, Network Administration
2000 Internship at MPÖ Peter Seidel GmbH Computer Network Administration

Stipends, achievements, project grants

2010 Co-recipient of Best Student Paper Award, ACM Graphics Interface, 2010.
2009 "InGeneIous - Visualization of biomolecular and clinical data". Funded by FFG, BRIDGE program, 2009.
2009 Scholarship for short time academic research and expert courses abroad (KUWI) granted by the Graz University of Technology
2006 Award for excellent performance as a student (Leistungsstipendium) granted by the Faculty of Computer Science, Graz University of Technology
2006 Research grant for students (Förderstipendium) awarded by the Faculty of Computer Science, Graz University of Technology

Scientific Activities

Conference Functions

  • Program committee member of the International Conference on Information Visualisation (IV) 2010
  • Program committee member of the Central European Seminar on Computer Graphics (CESCG) 2010

Reviewing for

  • IEEE InfoVis 2010
  • IEEE VAST 2010
  • EuroVis 2010
  • IEEE PacificVis 2010
  • IEEE Virtual Reality 2010
  • Bioinformatics Journal, Oxford University Press
  • IV09 - International Symposium on Information Visualization in Biomedical Informatics (IVBI)
  • Austrian Academy of Sciences (Österreichische Akademie der Wissenschaften)

Memberships in professional societies and interest groups

  • IEEE Computer Society
  • International Society for Computational Biology (ISCB)
  • International Association for Development of the Information Society (IADIS)
  • Austrian Computer Society (Österreichische Computer Gesellschaft)

Projects


  • Caleydo Visualization Framework
    Visit www.caleydo.org



  • iMEDgine - Medical Image Viewer
    Visit imedgine.org
    iMEDgine is a software that allows visualization and manipulation of medical 3D image data.
    The software itself provides the GUI, basic manipulation functionality and interfaces to algorithms as implemented in ITK.


Research Interests


  • Information Visualization
    • Multiple linked views
    • High-dimensional / multi-variate data
    • Visual analytics / visual data mining / knowledge discovery
    • Collaborative visualization / collaborative environments
    • Focus + context techniques
    • Visual links
    • Interaction
  • Bioinformatics
    • Pathways
    • Gene expression data
    • Clinical data

Other Stuff

Since 2007 I'm co-organizing the ICG Students' Club.

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